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Wrapper around the enrichR package.

TS_run_enrichR.Rd

Performs enrichment analyses for a vector of genes Depends on -enrichR (and that their servers are up, heh)

  • A live Internet connection

  • magrittr

  • dplyr Returns a list of the results of each database tested for.

Usage

TS_run_enrichR(
  gene_list,
  plot_enrichr = F,
  database_to_plot = "GO_Biological_Process_2023",
  databases = c("GO_Biological_Process_2023", "GO_Molecular_Function_2023",
    "GO_Cellular_Component_2023")
)

Arguments

gene_list

Character vector containing genes to test

plot_enrichr

Whether to plot the output using the enrichR function plotEnrich. Defaults to 'FALSE'

database_to_plot

What database to plot the output from. Defaults to '"GO_Biological_Process_2023"'

databases

What databases to test against. Defaults to 'c("GO_Biological_Process_2023", "GO_Molecular_Function_2023", "GO_Cellular_Component_2023")'