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Projects one Seurat object onto another and exports resulting dataframe

TS_project_scRNAseq_dataset_export_query.Rd

A work in progress... Will output resulting dataframe from Seurat::MapQuery

Usage

TS_project_scRNAseq_dataset_export_query(
  reference_object,
  query_object,
  dims = 1:20,
  reference_object_assay = "integrated",
  query_object_assay = "integrated",
  normalization.method = "SCT",
  plot_3D = F
)

Arguments

reference_object

A Seurat object, will be used as reference.

query_object

A Seurat object, will be used projected onto your reference object.

dims

Number of Principal Components to use for the UMAP. Defaults to '1:20'

reference_object_assay

Assay to use for reference Seurat object. Defaults to 'integrated'

query_object_assay

Assay to use for query Seurat object. Defaults to 'integrated'

normalization.method

Normalization method used by FindTransferAnchors. Alternatives are 'LogNormalize' or 'SCT'. Defaults to 'SCT'.

plot_3D

Whether to calculate 3 dimensions for the UMAP model. Defaults to 'FALSE'