Export featureplot to pdf without legend and axes
TS_featureplot_to_pdf_no_leg_no_axes.RdExport featureplot to pdf without legend and axes
Usage
TS_featureplot_to_pdf_no_leg_no_axes(
seurat_object,
file_prefix,
features,
pt.size = 0.5,
order = TRUE,
cols = c("lightgray", "#FEFDE2", "#FEEAC7", "#FDD7AC", "#FDC591", "#FDB276", "#FC9F5B",
"#FC8C40", "#FC8C40", "#EB753C", "#DA5D38", "#C94634", "#B72F30", "#A6172C",
"#950028"),
reduction = "umap",
width = 4.4,
height = 3.78
)Arguments
- seurat_object
The Seurat object you wish to plot
- file_prefix
Prefix for the saved file, e.g. sample name
- features
Vector of features to plot
- pt.size
Dot size, default = 0.5
- order
Whether to plot positive cells last, e.g. on top, default = TRUE
- cols
Vector of 2 colors to use (low->high), default = c("lightgray", "red")
- reduction
Dimensionality reduction technique to use for plotting, default = "umap"
- width
Width (inches) of the resulting plot.
- height
Height (inches) of the resulting plot.