Export featureplot to pdf in A4 format
TS_featureplot_to_pdf_A4.RdExport featureplot to pdf in A4 format
Usage
TS_featureplot_to_pdf_A4(
seurat_object,
file_prefix,
features,
pt.size = 1.5,
reduction = "umap",
order = TRUE,
cols = c("lightgray", "#FEFDE2", "#FEEAC7", "#FDD7AC", "#FDC591", "#FDB276", "#FC9F5B",
"#FC8C40", "#FC8C40", "#EB753C", "#DA5D38", "#C94634", "#B72F30", "#A6172C",
"#950028")
)Arguments
- seurat_object
The Seurat object you wish to plot
- file_prefix
Prefix for the saved file, e.g. sample name
- features
Vector of features to plot
- pt.size
Dot size, default = 1.5
- reduction
Dimensionality reduction technique to use for plotting, default = "umap"
- order
Whether to plot positive cells last, e.g. on top, default = 1.5
- cols
Vector of 2 colors to use (low->high), default = c("lightgray", "red")