Converts a dataframe and saves it in Fasta format

Requires a dataframe with two columns:

Usage

TS_dataframe_to_fasta(
  dataframe,
  filename = gsub(pattern = " ", replacement = "_", x = gsub(pattern = ":", replacement =
    "-", x = paste0(Sys.time(), ".fasta")))
)

Arguments

dataframe

A 2-column dataframe where:

• Column 1 contains cell IDs

• Column 2 contains the full nucleotide sequence of the contig (concatenated fwr and cdr sequences in nt-form)

filename

Filename for the output FILE.fasta. Defaults to 'system date and time.fasta'