TS was written to improve the quality of life for its creator, maybe it can help you as well?
It contains a collection of functions that may be relevant people analysing single-cell RNA-sequencing data, and analysing Ig(BCR)/TCR-sequences.
Please give our method article a look at the DOI button above. It shows the importance of removing BCR/TCR genes prior to performing unsupervised clustering and downstream analyses of scRNA-seq data containing lymphocytes.
You can find a reference webpage here, or under the About section in the top right corner of this webpage.
Installation
To install the latest version of the TS package:
devtools::install_github("TimothySundell/TS")Comments from the author
My plan is to keep this repository updated as much as possible. If something is not working, please post in the Issues section.
As of now, the package does not pass R CMD CHECK as the tidyverse way of coding leaves me a lot of unlinked global variables to reference. Will maybe be fixed in the future.
